kokitsuyuzaki

metaSeq

Meta-analysis package for RNA-seq count data

HexStickers

scTensor-workshop

TensorLyCV

Cross validation workflow of TensorLy

snakemake-exercise

Snakemake tutorial for bioinformatics beginners

BiocStickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

BuildABiocWorkshop

Template for building a bioconductor workshop package using github actions

Chapter3_2

実験医学別冊 RNA-Seqデータ解析 3章(2) リファレンスゲノムにマッピングしない方法

ChuoUniversity2022

Hands-on Materials

Deconvolution-experiments

Dockerfiles

Dockerfiles

graphsim

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

Machima

Cross-omics Cell-type Deconvolution by Joint Non-negative Trifactorization

MahaRank

Mahalanobis distance-based Plasmid-Host Ranking

maharank-workflow

Snakemake workflow to generate the reference files for MahaRank

pagoda2

R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

planets

preprocess-exercise

reductDims

Performs PCA and t-SNE

reproducible-tools-exercise

reproducible-tools-exercise-r

singlecell-exercise100

snakemake-sub-workflows-template

Snakemake workflow consisting of sub-worflows

TensorProjects

treefit-r

Treefit: R implementaion

trybiocworkshop

test

urchin-integration-workflow

Snakemake workflow to integrate multiple single-cell RNA-seq dataset of sea urchin

urchin-workflow

Snakemake workflow to analyze the bulk RNA-seq dataset of sea urchin

urchin-workflow2

Snakemake workflow to analyze the single-cell RNA-seq dataset of sea urchin

urchin-workflow3

Snakemake workflow to analyze the single-cell RNA-seq dataset of sea urchin