koenvandenberge

bulkATACGC

Normalization and GC-content effects in bulk ATAC-seq data

hbcRegenOE

scran

Clone of the Bioconductor repository for the scran package.

traviz

Trajectory functions for visualization and interpretation.

BiocStickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

cellxgene-documentation

Documentation for the cellxgene product

covid19Processing

dayjob

A collection of R functions or settings that I use all the time and was worth collecting.

DESeq2

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DESeq2.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DESeq2.

dynnormaliser

EDASeq

Clone of the Bioconductor repository for the EDASeq package, see https://bioconductor.org/packages/devel/bioc/html/EDASeq.html for the official development version.

edgeR

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/edgeR.html Contributions: http://bioinf.wehi.edu.au/edgeR. Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=edgeR.

GPfates

koenvandenberge.github.io

Personal website.

p63-HBC-diff

Code and resources related to the olfactory HBC stem cell differentiation project (oeHBCdiff)

pigeonsTom

A Shiny app for tracking my brother's racing pigeons' performance

pollenZI

prosstt

PRObabilistic Simulations of ScRNA-seq Tree-like Topologies

qsmooth

Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.

rnaseqDTU-1

RNA-seq workflow for differential transcript usage following Salmon quantification