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statOmics's repositories

tradeSeq

TRAjectory-based Differential Expression analysis for SEQuencing data

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MSqRob

Robust statistical inference for quantitative LC-MS proteomics

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satuRn

satuRn is a highly performant and scalable method for performing differential transcript usage analyses.

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stageR

stageR package

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msqrob2

Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure

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Rmd-website

An RMarkdown-based website rendered using GitHub Actions

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biostatistics

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HDDA

Course material for the High Dimensional Data Analysis course at Ghent University

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saseR

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TargetDecoy

Diagnostic Plots to Evaluate the Target Decoy Approach

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PDAEuroBioc22

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PeptidoformViz

package for launching shiny app

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biostatistics22

Timestamp of biostatistics 2022-2023

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DD_benchmarks

Benchmarking methods for differential detection analyses

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DD_cases

Case studies for our manuscript on differential detection workflows

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ESVCP2022

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gwasVaudelApril2024

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HDDA22

Course material for the High Dimensional Data Analysis course at Ghent University

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HDDAData

Datasets for the High Dimensional Data Analysis course

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msqrob2gui

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msqrob2PTMpaper

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PDA

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PDA22GTPB

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PDA23EBI

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saseRPaper

Code to reproduce the results of the saseR manuscript

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sbc

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SGA

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SGA22

Timestamp of SGA

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statOmics.github.io

https://statOmics.github.io

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TargetDecoyPaper

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