knmkr

lift-over-vcf

UCSC liftOver (genome build converter) for vcf format

ncbi-gene-pg

PostgreSQL schema for NCBI Gene

api-oauth-example-flask

OAuth Example - Python Flask web app

api-oauth-example-rails

OAuth Example - Ruby on Rails webapp

bGWAS

R package for Bayesian Genome-Wide Association Study

bgzf-filehandle

Nodejs filehandle for reading bgzip+.gzi compressed files

BrowserFS

BrowserFS is an in-browser filesystem that emulates the Node JS filesystem API and supports storing and retrieving files from various backends.

clinvar

This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.

crick

django-easy-audit

Yet another Django audit log app, hopefully the simplest one.

DNAtix-DNA-Compression-Tool

Compression Tool for DNA

GADGET_explore

Source code for the GADGET explore module: https://gadget.biosci.gatech.edu/explore/

genomelink-go

GENOME LINK SDK, implemented in Go

genomelink-python

GENOME LINK Python SDK

genomelink-ruby

Ruby gem to use Genomelink APIs

gnomad_qc

gnomadjs

JavaScript tools for exploring variant data

hail

Scalable genomic data analysis.

indexedfasta-js

jbrowse

A modern genome browser built with JavaScript and HTML5.

mcxToProfile

Convert macOS property lists, defaults and MCX into Configuration Profiles with Custom Settings payloads

py2bit

A python library for accessing 2bit files

quickstart-compliance-hipaa

AWS Quick Start Team

SAIGE

secure-dti

Realizing private and practical pharmacological collaboration

secure-gwas

Software for "Secure genome-wide association analysis using multiparty computation", Nature Biotechnology, 2018

tabix-js

Read Tabix-indexed files, either with .tbi or .csi indexes

taming-the-state-in-react

Taming the State in React

twobit-js

Read .2bit files with pure JS. Works in node or webpack.

vcf-js

High performance VCF parser in pure JavaScript