knmkr

Kensuke Numakura's starred repositories

res

Research and Engineering Studio (RES) is an AWS supported open source product that enables IT administrators to provide an easy-to-use web portal for scientists and engineers to run technical computing workloads on AWS.

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MetaMinimac2

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CromwellOnAzure

Microsoft Genomics implementation of the Broad Institute's Cromwell workflow engine on Azure

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ga4gh-tes

C# implementation of the GA4GH TES API; provides distributed batch task execution on Microsoft Azure

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HLA-TAPAS

HLA-TAPAS pipeline for HLA association and fine-mapping studies

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HLA_analyses_tutorial

A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying HLA alleles driving complex disease"

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arg-needle-lib

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hpp_pangenome_resources

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HPP_Year1_Assemblies

Assemblies from HPP Year 1 production

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HPP_Year1_Data_Freeze_v1.0

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haptools

Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis

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mojo

The Mojo Programming Language

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aws-lambda-python-runtime-interface-client

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aws-lambda-developer-guide

Supplementary resources for the AWS Lambda Developer Guide

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vivus

JavaScript library to make drawing animation on SVG

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dbsnp-pg

PostgreSQL schema for NCBI dbSNP

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shell-plugins

Seamless authentication for every tool in your terminal.

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hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

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clinvar

This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.

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pico

Ultra-tiny router for Cloudflare Workers and Deno

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LocalNgsRelate

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IBDkin

IBD based kinship estimation

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hap-ibd

The hap-ibd program detects identity-by-descent segments in phased genotype data.

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amazon-omics-developer-guide

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trufflehog

Find, verify, and analyze leaked credentials

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prowler

Prowler is an Open Source Security tool for AWS, Azure, GCP and Kubernetes to do security assessments, audits, incident response, compliance, continuous monitoring, hardening and forensics readiness. Includes CIS, NIST 800, NIST CSF, CISA, FedRAMP, PCI-DSS, GDPR, HIPAA, FFIEC, SOC2, GXP, Well-Architected Security, ENS and more

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