knausb

vcfR

Tools to work with variant call format files

vcfR_documentation

Documentation for vcfR

bam_processing

Process SAM/BAM files accroding to the 1k genomes methods

nuccomp

Summarize the contents of FASTA files.

myRFinance

soilborne_disease_analysis

Soilborne Disease Data Collection and Analysis

APS_IntroR_2020

Materials for the 2020 APS introduction to R workshop

opp_card

Open Plant Pathology buisness card

OrthoMCL_notes

Notes on how to use OrthoMCL

posters

Posters I've presented at conferences

knausb.github.io

Brian J. Knaus's GitHub home

pinfsc50

Phytophthora infestans supercontig_1.50

adegenet

adegenet: a R package for the multivariate analysis of genetic markers

BUSCOplot

Plots based on BUSCO results

codingofkindness

Let’s figure out how to be better humans to each other

compbio

Comp bio

effectR

An R package to call oomycete effectors

faraway_2004

Faraway 2004: Linear Models with R

GAPIT3

Genome Association Predict Integrate Tools

GAPIT3documentation

hemp_tools

Tools for working on hemp genomics

hempTools

Tolls for hemp projects

learning_R

A base R guy teaching R to new users so he can learn tidyverse

myRhtslib

Learning Rhtslib

pegas

Population and Evolutionary Genetics Analysis System

proc_mpileup

Process a directory of gzipped samtools mpileup files, take coverage count, standard deviation, and nonzero counts for each and write to one table

R_misc

Miscellaneous R stuff

tidy_tuesday_template

template file for sharing tidy tuesday visualizations

TidyTuesday_BPP

BPP and BPP alums meet for Tidy Tuesday

venables_ripley

Examples from Venables and Ripley