Kate D Lee's repositories

AFSR

Script to sumarise a sound label files from matlabHTK output

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247.782

Special topic in computational biology

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adv-r

Advanced R: a book

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Ancestral

attempts to re-construct ancestral genomes

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DEA_and_fit

Perform differential expression analyses, fit the results and classify hybrid gene expression

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generic_DESeq_setup

setup scripts to carry out a differential expression analysis

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histone_mutants

Analysis for Epichloe festucae Fl1_v3 histone mutants setB and clrD.

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key-scripts-for-hihi-snpchip-design

key scripts for hihi snpchip design

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stromata

Analysis to identify core genes and clusters involved in Epichloe stromata formation

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ggblanket

Simplify ggplot2 visualisation

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multi_bowtie

Perform Bowtie 2 stringent mapping to verify HyLiTE results

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openair

Tools for air quality data analysis

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pafr

Read, manipulate and visualize 'Pairwise mApping Format' data in R

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tidytuesday

Official repo for the #tidytuesday project

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