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kipoi / kipoiseq

Standard set of data-loaders for training and making predictions for DNA sequence-based models.

Home Page:https://kipoi.org/kipoiseq/

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`SingleVariantVCFSeqExtractor` and `SingleSeqVCFSeqExtractor` assume 0-base vcf file

MuhammedHasan opened this issue · comments

commented

SingleVariantVCFSeqExtractor and SingleSeqVCFSeqExtractor assume that VCF file is 0-based 🤦‍♂️ . This is wrong because VCF files are by definition 1-based.