Kevin Yamauchi's repositories
ome-ngff-tables-prototype
prototype python implementation of the ome-ngff table spec
open-image-data
A handbook in producing and using open image data and pipelines.
morphospaces
A library for creating and exploring morphospaces
PointAnnotator
Demo of a napari-based annotation app
kevinyamauchi.github.io
Personal website based on the awesome academicpages template (https://academicpages.github.io).
cellcanvas
A tool to support interactive machine learning for cryoET data
cellier
A multiscale cellular architecture visualization toolkit.
docs
Documentation for napari (other than API docs)
LaPreprint
📝 A nicely formatted LaTeX preprint template
membrain-seg
membrane segmentation in 3D for cryo-ET
morphosamplers
A library for sampling image data along morphological objects such as splines and surfaces.
morphosurfaces
Data models and utilities for meshed surfaces.
napari-animation
A napari plugin for making animations
napari-spatialdata
Interactive visualization of spatial omics data
napari-threedee
A suite of 3D interactivity tools for napari
pygfx
A python render engine running on wgpu.
pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
spatialdata
Spatial Data
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
surforama
a tool for using surfaces to explore volumetric data in napari