Kevin Schaper's repositories
agr_pageview_popularity_calculator
Download google analytics data for Alliance of Genome Resources sites
biolink-model
Schema and generated objects for biolink data model and upper ontology
biolink-model-pydantic
Pydantic dataclasses for the Biolink model
bioregistry
📮 An integrative registry of biological databases, ontologies, and nomenclatures.
golr-loader
Convert SciGraph queries into json that can be loaded by Golr
kg-phenio
A Graph for experiments doing ML on ontologies.
kgx
KGX is a Python library for exchanging Knowledge Graphs
koza
Data ingest framework for the Biolink model
monarch-file-server
Terraform, scripts, and documentation for the monarch public file server
monarch-qc
WORK IN PROGRESS - new effort at implementing a QC Dashboard for the Monarch KG and Ingest
monarch-ui
A modern web UI for revealing and understanding Monarch Initiative information.
mondo
Mondo Disease Ontology
oai-monarch-plugin
First pass at a thin wrapper around the Monarch API and ChatGPT plugin
oakx-grape
Experimental OAK plugin for Grape
obook
OBO Organized Knowledge: Training materials for becoming an OBO engineer
orphanet-koza-transform
A quick one-off koza transform of Orphanet gene to disease data
prefixcommons-py
Prefix commons python utlities
pydanticgen-demo
A small demonstration of LinkML's pydantic code generator
pyobo
📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
semsimian
Simple rust implementation of semantic similarity
tislab.org
Public-facing website for tislab.org
universalizer
The KG-Hub Universalizer provides functions for knowledge graph cleanup and identifier normalization.