Kai(kevin) Luo's repositories
d2l-zh
《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被60多个国家的400多所大学用于教学。
MR_template
Template for running PWMR on Rosalind
ML-Notebooks
:fire: Machine Learning Notebooks
ML-YouTube-Courses
📺 Discover the latest machine learning / AI courses on YouTube.
tipr
An R package for conducting sensitivity analyses for unmeasured confounders
causal-ml
Must-read papers and resources related to causal inference and machine (deep) learning
ML-Course-Notes
🎓 Sharing machine learning course / lecture notes.
mmvec
Neural networks for microbe-metabolite interaction analysis
tidytuesday
Code snippets for weekly #tidytuesday project
microbiomeMarker
R package for microbiome biomarker discovery
GRAPPLE
An R package for Mendelian Randomization
PandaOmics_ALS_replication
This repository is a collection of scripts and data dedicated to the attempt of replicating sores used in the PandaOmics target identification process.
MetabolomicsGWAS_INTERVAL_EPICNorfolk
This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemical individuality and their effects on human health"
PHESANT
PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
colochelpR
Helper/wrapper functions for executing coloc & associated analyses
MR-CAD
This repository stores all code files for the MR-CAD project.
host_gene_microbiome_interactions
Analysis framework for integrating gut microbiome and host gene expression data
causalMed
Causal Mediation analysis
mummichog
pathway and network analysis for metabolomics
SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
UniprotR
Retrieving Information of Proteins from Uniprot
LDSCforRyten
S-LDSC scripts for use on MR server.
pGWAS_discovery
Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"
MicrobiomeStatPlot
Interpretation and visualization of microbiome charts
MicrobiomeProtocol
Microbiome Protocol eBook related documents and scripts.
crossplatform_mGWAS
Cross-platform genetic discovery of small molecule products of metabolism and application to clinical outcomes Luca A. Lotta, Maik Pietzner, Isobel D. Stewart, Laura B.L. Wittemans, Chen Li, Roberto Bonelli, Johannes Raffler, Emma K. Biggs, Clare Oliver-Williams, Victoria P.W. Auyeung, Jian’an Luan, Eleanor Wheeler, Ellie Paige, Praveen Surendran,