Kai(kevin) Luo (kevinluolk)

kevinluolk

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Location:Shanghai, China

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Kai(kevin) Luo's repositories

awesome-multi-omics

List of software packages for multi-omics analysis

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ADRD_Brain_Aging

ADRD Brain Aging projects

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analysis_pipeline_WDL

Collection of WDL workflows based off the University of Washington TOPMed DCC Best Practices for GWAS. The WDL structure was based upon CWLs written by the Seven Bridges development team.

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bigsnpr

R package for the analysis of massive SNP arrays.

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Blogdown

RBlogdown

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forestploter

Draw forestplot in R

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formatbook

A collection of commonly used format for quick lookup.

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GenomicSEM

R-package for structural equation modeling based on GWAS summary data

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gtex-pipeline

GTEx & TOPMed data production and analysis pipelines

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gwaslab

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

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hail

Cloud-native genomic dataframes and batch computing

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iMetaPlot

iMeta teaches you to plot

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INF

SCALLOP-INF analysis

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Lifelines_NEXT

Lifelines NEXT is a birth cohort designed to study the effects of intrinsic and extrinsic determinants on health and disease in a four-generation design. It is embedded within the Lifelines cohort study, a prospective three-generation population-based cohort study recording the health and health-related aspects of 167,729 individuals living in Nort

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mlexperiments

An extensible framework for reproducible machine learning experiments

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nestedcv

Nested cross-validation with feature selection filters

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package-BoutrosLab-plotting-general

Functions to Create Publication-Quality Plots

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pgsc_calc

The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

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prop-coloc

A summary data-based proportional colocalization test that accounts for uncertainty in variant selection

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ranger

A Fast Implementation of Random Forests

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scDRS

Single-cell disease relevance score (scDRS)

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survex

Explainable Machine Learning in Survival Analysis

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systemsgenetics

Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool

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TCSC

TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.

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treeshap

Explain your tree model with shap values efficiently

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TWAS-GSEA

R script that performs gene-set or gene property analysis using TWAS results.

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UKB_RAP

Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

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