kevinluolk / GCluster

GCluster: graph-based clustering

library(devtools)
install_github("CBIIT-CGBB/GCluster")

Examples:

GCluster(dat=dat, wt=wt) and plot a graph removed edges by weights

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Clustering with weight and Clustering with k number

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Clustering with k means or with minimum spanning tree plot

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Cluster labeling

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Cluster with several algorithms and cluster cartoon plot

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Cluster contours

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Cluster probabilities by simulation

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Cluster visualization

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Cluster trajectory analysis

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Cluster tree analysis (dynamic cluster analysis)

R codes for generating clusters from k=2 to k=30

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Options: i2d function of the package (i2d package)

Convert image to digital (generate complex data sets for cluster algorithm evaluation)

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Convert the image (top) to digital (bottom plot)

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