Kimberly Dill-McFarland's repositories
workshops_UW_Madison
Files associated with microbiome workshops at the Bioinformatics Resource Center (BRC) at the U. of Wisconsin-Madison
sliding_windows
Bash script to create sliding windows from fasta files
micro_ecol
Scripts used in the analysis of amplicon microbiota data in R
R_bioinformatic_scripts
R scripts related to bioinformatic analyses. See https://github.com/BIGslu for most recent versions
bash_bioinformatic_scripts
Bash shell scripts related to bioinformatic analyses
kdillmcfarland.github.io
Personal website
Bioinformatics_Tools
Functions and scripts for sequence data analysis.
blogdown_site
R-Ladies Seattle Site
Bloom_DillMcFarland_2020
Our wedding website
EDUCE_desc
Analyses associated with "An integrated, modular approach to teaching data science in microbiology"
FAST_method
Analyses associated with "Fecal Aliquot Straw Technique (FAST) allows for easy and reproducible subsampling: assessing interpersonal variation in trimethylamine-N-oxide (TMAO) accumulation"
intro-curriculum-r
Custom curriculum for teaching R, the Unix Shell, & Git with an integrated workflow and reproducible research practices.
pdxrconf.github.io
Cascadia R Conf
PICO
Analyses associated with "Oral probiotic combination of Lactobacillus and Bifidobacterium alters the gastrointestinal microbiota during antibiotic treatment for Clostridium difficile infection"
rladies-seattle-organizing
Information for organizing R-Ladies Seattle
slack-invite-automation
A tiny web application to invite a user into your slack team.
test2
R-ladies workshop repo