kbaseapps

jgi_mg_assembly

Contains apps for running the JGI metagenome assembly pipeline

PangenomeOrthomcl

CircularGenomeAdvanced

Graphical maps of circular genomes that show sequence features, base composition plots, analysis results and sequence similarity plots.

fba_tools

A suite of metabolic modeling tools created using the KBase SDK

GenomeComparison

This module contains the code for some comparative genomics functions in KBase.

kb_MaSuRCA

This KBase app wraps the genome assembly software MaSuRCA(Maryland Super-Read Celera Assembler)

kb_rxn_gene_finder

coexpression

DifferentialExpressionUtils

Module to upload/download/export differential expression object

ExampleWDL

Example WDL app

FeatureSetUtils

GenomeProteomeComparison

GenomeReport

A module with tools to generate different reports on a genome or a set of genomes

jgi_mg_assembly_wdl

JGI Metagenome Assembly WDL Edition

kb_bfc

kb_cmash

kbase containment mash

kb_functional_enrichment_1

kb_mash

KBase MASH app

kb_paperblast

KBase wrapper for PaperBLAST

kb_plant_rast

kb_RAST

a module that hosts the underlying RAST annotation calls with refdata as a dynamic service

kb_ReportMetrics

reporting the kbase metrics

kb_sample_spreadsheet

kb_sdk_catalog_metrics

kb_util_dylan

kb_Velvet

MGLToolsUtil

ReferenceDataManager

This SDK module contains functions related to the loading, updating, and management of reference data in KBase

RunTester

This is a mock app to help with testing the SDK Method Runner

sdk_ci_demos