kbaseapps

kbaseapps

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kbaseapps's repositories

kb_djornl

A KBase module wrapper and visualization for RWR tools which use the random walk with restart method on multiplex coexpression networks representing genes (nodes) and distinct lines of evidence (edges) facilitating the rapid determination of the functional context of a set of genes of interest.

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kb_gtdbtk

GTDB-Tk App

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AssemblyUtil

Set of KBase functions for interacting with Assemblies and ContigSets using the KBase data_api

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StaticNarrative

A dynamic service for creating and managing Static Narratives

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GenericsUtil

Utilities to import and map KBase Generic objects.

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kb_blast

BLAST+ implementation for KBase

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kb_combinatrix

The KBase Combinatrix app allows you to generate all possible combinations of your favourite KBase datasets by matching items in the dataset based on attribute values.

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kb_filtlong

App to wrap filtlong in KBase

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kb_orthofinder

OrthoFinder app for annotating plant enzymes

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kb_polypolish

KBase wrapper for Polypolish

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kb_quast

KBase wrapper for the QUAST assembly quality assessment tool.

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kb_SetUtilities

Module for Set related utilities

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ReadsUtils

Functions for uploading and downloading KBase reads files.

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SetAPI

Dynamic service for managing sets

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