Kaur Alasoo's repositories
wiggleplotr
A small R package to make sequencing read coverage plots in R.
MTAT.03.239_Bioinformatics
Teaching materials and tutorials for the bioinformatics course thought at the University of Tartu
macrophage-gxe-study
Shared genetic effects on chromatin and gene expression reveal widespread enhancer priming in immune response
RNAseq_pipeline
Pipeline for downloading and processing published RNA-seq datasets
Blood_ATAC
Reanalysis of the ATAC-Seq data from the Corces et al. 2016 paper
pivotviewer.py
Tools to create PivotViewer collections in Python.
WigglePlotR_old
A tool to create wiggle plots from RNA-Seq in R.
colocWrapper
Helpful functions to streamline colocalisation analysis with coloc
flow_cytomtery_genetics
Analysis of macrophage cell surface expression of CD14, CD16 and CD206 proteins using flow cytometry.
Intro-to-rnaseq-hpc-O2
This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
reviseAnnotations
R package to compare transcript annotations and split them into alternative transcription events.
ryanair-seat-allocation
How random are Ryanair's randomly allocated seats really?
coexpression-transEQTL
Analysis source code for co-expression trans-eQTL analysis
eigenMT
An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants
hadge
Comprehensive pipeline for donor demultiplexing in single cell
kauralasoo.github.io
💎 🐳 A super customizable Jekyll theme for personal site, team site, blog, project, documentation, etc.
knitr-example
An example of a genomics analysis using knitr
merge_multistudy_data
This repo is to merge genotype and phenotype daya of multiple datasets having common cell_types
mmseq
Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.