eQTL Catalogue

eQTL Catalogue's repositories

Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue

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Nextflow workflow for applying SuSiE finemapping model to a large number of molecular QTLs

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This pipeline will run QC measures of both genotype and phenotype data and will normalise quantified phenotypes

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Portable genotype imputation pipeline used by the eQTL Catalogue

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Workflows for performing genotype QC before and after imputation

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RNA-seq quantification pipeline used by the eQTL Catalogue

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eQTL Catalogue Summary Statistics

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This repo contains a nextflow pipeline to do colocalisation analysis of QTLs against GWASs

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Get up and running with EBI-themed Jekyll fast (rolled with gh-pages in mind, clone/fork suggested)

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This repo contains necessary scripts to run Quality Control (QC) and Normalisation on phenotype count matrices generated by rnaseq pipeline.

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