Katarzyna Wreczycka's repositories
aws-for-bioinformatics
AWS for Bioinformatics Researchers
bioinformatics-projects
Collection of selected small bioinformatic projects
scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
awesome_spatial_omics
tools and notes for spatial omics
rworkflows
Continuous integration for R packages. Automates testing, documentation website building, and containerised deployment.
training-collection
Collection of bioinformatics training materials
igv-webapp
IGV Web App
motifActivity
motifActivity: An R package for the computational reconstruction of transcription regulatory networks from high-throughput data
katwre.github.io
Technical Portfolio
DAMEfinder
Finds DAMEs - Differential Allelicly MEthylated regions
makeWGBSnake
Snakemake pipeline for WGBS analysis (private repository)
fastglm
Fast glm fitting via RcppEigen
pyreadr
Python package to read and write R RData and Rds files into/from pandas dataframes. No R or other external dependencies required.
awesome-multi-omics
List of software packages for multi-omics analysis
deep-learning-specialization-coursera
Deep Learning Specialization by Andrew Ng on Coursera.
devtools
Tools to make an R developer's life easier
genomation
R package for genomic feature analysis and visualization
pigx_bsseq
bisulfite sequencing pipeline from fastq to methylation reports
Workflows
Snakemake workflows for best practice genomic analysis
bimsbbioinfo.github.io
website for the platform