Katarzyna Wreczycka's repositories
bioinformatics-projects
Collection of selected small bioinformatic projects
deep-learning-specialization-coursera
Deep Learning Specialization by Andrew Ng on Coursera.
genomation
R package for genomic feature analysis and visualization
pigx_bsseq
bisulfite sequencing pipeline from fastq to methylation reports
awesome-multi-omics
List of software packages for multi-omics analysis
awesome_spatial_omics
tools and notes for spatial omics
bimsbbioinfo.github.io
website for the platform
DAMEfinder
Finds DAMEs - Differential Allelicly MEthylated regions
devtools
Tools to make an R developer's life easier
fastglm
Fast glm fitting via RcppEigen
igv-webapp
IGV Web App
katwre.github.io
Technical Portfolio
makeWGBSnake
Snakemake pipeline for WGBS analysis (private repository)
motifActivity
motifActivity: An R package for the computational reconstruction of transcription regulatory networks from high-throughput data
pyreadr
Python package to read and write R RData and Rds files into/from pandas dataframes. No R or other external dependencies required.
rworkflows
Continuous integration for R packages. Automates testing, documentation website building, and containerised deployment.
scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
training-collection
Collection of bioinformatics training materials
Workflows
Snakemake workflows for best practice genomic analysis