katie-b-io

aparent

APA Regression Net - Predict and Engineer Alternative Polyadenylation

einops

Flexible and powerful tensor operations for readable and reliable code (for pytorch, jax, TF and others)

vit-explain

Explainability for Vision Transformers

giggle

Interval data structure

guanine

GUANinE Benchmark Dataset and Tools

fastai

The fastai deep learning library

fastbook

The fastai book, published as Jupyter Notebooks

genomic-language-model-pretraining-with-healthomics-seq-store

GhmCN

Graphical 5hmC Convolutional Networks

Muto_Wilson_NComm_2020

Workflow for analysis of healthy human kidney by snRNAseq and snATACseq

SnapATAC2

Single-cell epigenomics analysis tools

EpiAttend

Single cell epigenome modeling

GenBench

BEND

Benchmarking DNA Language Models on Biologically Meaningful Tasks

LLM_eval

Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"

enformer-pytorch

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

polygraph

Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.

esm

mamba

Mamba SSM architecture

nucleotide-transformer

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

nerre-llama

Repository for training LLaMa 2 models using the NERRE format.

Awesome-Chart-Understanding

A curated list of recent and past chart understanding work based on our survey paper: From Pixels to Insights: A Survey on Automatic Chart Understanding in the Era of Large Foundation Models.

promptbase

All things prompt engineering

JARVIS

JARVIS, a system to connect LLMs with ML community. Paper: https://arxiv.org/pdf/2303.17580.pdf

Awesome-Multimodal-Large-Language-Models

:sparkles::sparkles:Latest Advances on Multimodal Large Language Models

evo

Biological foundation modeling from molecular to genome scale

making-games-with-ai-course

This repository contains the ML For Games Course

Prot2Text

ml-ferret

ml-symphony

Symphony: Interactive Data Widgets (CHI 2022)