Jakob Voigts's repositories
whisker_tracking
Unsupervised whisker tracking in freely behaving mice/rats
rotating-2p-image-correction
code for Voigts & Harnett, Somatic and dendritic encoding of spatial variables in retrosplenial cortex differs during 2-D navigation
2d_lighthouse_tracking
2d tracking with valve lighthouse on teensy
regularized_models_demo
Demonstrates a few simple applications of L2 regularization
tenss_spike_pipeline_tutorial
minimal spike extraction and sorting
2p_analysis
Tools for analyzing 2p data
2p_opto_filters
calculate filters for 2p opto
find_halfspace_matlab
fast lookup in sorted arrays in matlab
open-ephys-lfp-plot-optimization
test code for optimal time series rendering
optical_flow_analysis
Applies the Horn–Schunck method to a video and extract motion profile over time.
2p_alignment_targets
alignment aides for neurolabware 2p scope
bonsai-osc-bidirectional-example
Sending data back and forth between bonsai and a pyqt python program via Osc
chronic_window_spacer
machined holder to replace stacked cover slip windows
drive_assembly_jigs
assembly jigs for hd drive
intan_CLAMP
fork of the intan clamp software
jonnew-lbr
jonnew's personal CAD library
Miniscope_Analysis
MATLAB analysis functions for Miniscope project.
mountainlab-js
MountainLab is data processing, sharing and visualization software for scientists. It is built around MountainSort, spike sorting software, but is designed to be more generally applicable.
plugin-GUI
Open Ephys GUI with plugin architecture
public-presentations
My public presentations
stereopsis_test
very simple depth perception test
syringe_pump
simple, precise syringe pump, optimized for price of batches of ~10-50