jvizcar

nvm

Node Version Manager - POSIX-compliant bash script to manage multiple active node.js versions

yolov5

YOLOv5 🚀 in PyTorch > ONNX > CoreML > TFLite

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

ultralytics

NEW - YOLOv8 🚀 in PyTorch > ONNX > OpenVINO > CoreML > TFLite

vision

Datasets, Transforms and Models specific to Computer Vision

turicreate

Turi Create simplifies the development of custom machine learning models.

yolov3

YOLOv3 in PyTorch > ONNX > CoreML > TFLite

Pytorch-UNet

PyTorch implementation of the U-Net for image semantic segmentation with high quality images

SegLossOdyssey

A collection of loss functions for medical image segmentation

fast-rcnn

Fast R-CNN

early-stopping-pytorch

Early stopping for PyTorch

review_object_detection_metrics

Object Detection Metrics. 14 object detection metrics: mean Average Precision (mAP), Average Recall (AR), Spatio-Temporal Tube Average Precision (STT-AP). This project supports different bounding box formats as in COCO, PASCAL, Imagenet, etc.

CLAM

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

pytorch-goodies

PyTorch Boilerplate For Research

itkwidgets

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

brainchop

Brainchop: In-browser 3D MRI rendering and segmentation

Soft-NMS

Python and Pytorch two implements of Soft NMS algorithm

DeepLabv3FineTuning

Tutorial on fine tuning DeepLabv3 segmentation network for your own segmentation task in PyTorch.

semantic-segmentation-pytorch

Pytorch implementation of FCN, UNet, PSPNet, and various encoder models.

plaquebox-paper

Repo for Tang et al, bioRxiv 454793 (2018)

multitask-dipath

Implementation of PyTorch-based multi-task pre-trained models

hackathon

DICOM WG-26 Annotation Hackathon

kappa-stats

A little Python script to generate Cohen's Kappa and Weighted Kappa measures for inter-rater reliability

DSA-WSI-DeID

A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.

webix_image_organizer

Image Organizer app that uses the Webix Toolkit to interact with a Girder server

superpixel-classification

A test cli for classifying superpixels with arbitrary labels

BrainSeg

Automated Grey and White Matter Segmentation in WSI

NeuroTK-Dash

Dashboard and plotly/dash app for interacting with DSA and NeuroTK functions

morpho-type

Prediction of cell type from morphology features and neighborhood information

HistomicsTK-PodoCount