JC Vizcarra's repositories
dockerbuild
testing out automatic Docker image build on Github push
Dockerfiles
several dockerfiles used in creation with jvizcarra Docker hub account
DockerGutmanPyTorch
Docker with PyTorch-GPU, HistomicsTK, girder client, and other computer vision packages.
DockerMultiplexRegistration
For use in registering rounds in multiplex imaging.
DockerWorkflowsPyTorchDSA
Generic Docker with PyTorch (+ others) and girder client installed.
fastapi-learning
Code for learning how to use fastapi
Fibrosis_Code
Cleaned up codeset used in Fibrosis Quantification project.
JC_Toolkits
Python module developed for working with the DSA / HistomicsUI as part of my PhD work in David Gutman's lab.
nft-detection-yolov5
YOLOv5 🚀 in PyTorch > ONNX > CoreML > TFLite
plaquebox-paper
Repo for Tang et al, bioRxiv 454793 (2018)
SageMultiplexInteractors
Provides Jupyter notebook that deploy interactors for displaying mulitiplex image analysis results.
SimpleITK-Notebooks
Jupyter notebooks for learning how to use SimpleITK