jvizcar

feature_ensembles_clf

dockerbuild

testing out automatic Docker image build on Github push

Dockerfiles

several dockerfiles used in creation with jvizcarra Docker hub account

DockerGutmanPyTorch

Docker with PyTorch-GPU, HistomicsTK, girder client, and other computer vision packages.

DockerMultiplexRegistration

For use in registering rounds in multiplex imaging.

DockerWorkflowsPyTorchDSA

Generic Docker with PyTorch (+ others) and girder client installed.

electron-tutorial

fastapi-learning

Code for learning how to use fastapi

Fibrosis_Code

Cleaned up codeset used in Fibrosis Quantification project.

Image_Organizer_Tasks

JC_Toolkits

Python module developed for working with the DSA / HistomicsUI as part of my PhD work in David Gutman's lab.

MultiplexImagingRegistration

nft-detection-yolov5

YOLOv5 🚀 in PyTorch > ONNX > CoreML > TFLite

packaging_tutorial

Following the PyPI packaging tutorial.

plaquebox-paper

Repo for Tang et al, bioRxiv 454793 (2018)

SageMultiplexInteractors

Provides Jupyter notebook that deploy interactors for displaying mulitiplex image analysis results.

SimpleITK-Notebooks

Jupyter notebooks for learning how to use SimpleITK

wsi-macro-boxes

Identifying missed tissue in WSI scanning process.