João Cavalcante's repositories
reconciler
Python package to reconcile DataFrames
wikidata_panglaodb
Research compendium for the project "Wikidata to build 5-star Linked Open biological databases: A case study of PanglaoDB".
go2cell
Link Gene Ontology IDs to cell types
arete
AMR/VF LGT focused bacterial genomics analysis workflow
awesome-compbio-chatgpt
An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology
bioconda-recipes
Conda recipes for the bioconda channel.
cookiecutter-snekpack
A cookiecutter package for an enlightened python package
dada2_latch
A Latch workflow for running DADA2
git_example
Pequeno repositório de exemplo do git
jvfe.github.io
My personal website
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nextflow-vim
Nextflow plugin for VIM
nfcore_fetchngs_latch
Latch wrapper around nf-core/fetchngs
protein-neighbourhood
Simple webpage for protein interactions
taxonomy_latch
Latch Workflow to run the Kaiju classifier
tcruzi_gene_exp
Workflow to preprocess and extract T. cruzi gene expression data
ukb_ppp_gsmr
Workflow to run GCTA-GSMRs Mendelian Randomization using UKB-PPP data as exposure and a given sumstats as an outcome.