Dalmolin Systems Biology Group

MEDUSA

Metagenomic pipeline managed by snakemake

bulkrna

Dalmolin Group's workflow for pre-processing, alignment and quantification of bulk RNA-seq data

neurotransmissionevolution

Research compendium for Viscardi et al, 2020.

euryale

A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA

ewing-mra-netinfer

intro-single-cell

Introduction to single-cell RNA-seq analysis

KeggPathwayAPs

Systems Biology Approaches in the Investigation of Articulation Points in Kegg Metabolic Pathways

Network-lncRNA-mCRPC

Scripts used in the analyzes of the paper titled "Revealing metastatic castration-resistant prostate cancer (mCRPC) master regulator through lncRNA-centered regulatory network".

annotate

Python script to annotate each query using the best alignment for which a mapping is known

gene-regulatory-networks

meta_taraoceans

Bioinformatics research project on metagenomic in samples from TaraOceans expediction

transcriptogramer

R package for transcriptional analysis based on transcriptograms

trastuzumab_dge

DGE for trastuzumab-treated expression datasets

ComparisonMEGANxMEDUSA

geneplast.data.string.v110

KEGG-Pathway-Viewer

Tool to visualize KEGG networks

LeadNPC

Systems Biology-Based Analysis Indicates Global Transcriptional Impairment in Lead-Treated Human Neural Progenitor Cells

mdd-paper

Sex-specific transcriptional alteration profile of MDD

MicroView

A reporting tool for aggregating results from taxonomic classification analyses

seriation

C code to find a suitable linear order for a set of proteins

.github

dalmolingroup.github.io

Dalmolin Group's website

essential_genes_paper

Repository for the ancestry analysis of essential genes in eukaryotes

MEDUSA_supplements

A hub for information related to the manuscript "MEDUSA: A Pipeline for Sensitive Taxonomic Classification and Flexible Functional Annotation of Metagenomic Shotgun Sequences"