Justin Yi's starred repositories

cleo

Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience

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brian2

Brian is a free, open source simulator for spiking neural networks.

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OutlierDetection.jl

Fast, scalable and flexible Outlier Detection with Julia

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OnlineStats.jl

⚡ Single-pass algorithms for statistics

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cnn-ripple

CNN-ripple is a 1D convolutional neural network (CNN) operating over high-density LFP recordings to detect hippocampal SWR both offline and online.

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rippl-AI

A open toolbox of several machine learning approaches for sharp-wave ripple detection

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Blink.jl

Web-based GUIs for Julia

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hybridLFPy

Biophysics-based prediction of LFPs from point-neuron networks

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netpyne

A Python package to facilitate the development, parallel simulation, optimization and analysis of multiscale biological neuronal networks in NEURON.

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CARLsim6

CARLsim is an efficient, easy-to-use, GPU-accelerated software framework for simulating large-scale spiking neural network (SNN) models with a high degree of biological detail.

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arbor

The Arbor multi-compartment neural network simulation library.

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PyCall.jl

Package to call Python functions from the Julia language

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TrainSpikingNet.jl

train a spiking recurrent neural network

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DynamicAxisWarping.jl

Dynamic Time Warping (DTW) and related algorithms in Julia, at Julia speeds

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DrWatson.jl

The perfect sidekick to your scientific inquiries

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NCDatasets.jl

Load and create NetCDF files in Julia

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ControlSystems.jl

A Control Systems Toolbox for Julia

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InfiniteOpt.jl

An intuitive modeling interface for infinite-dimensional optimization problems.

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Literate.jl

Simple package for literate programming in Julia

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MAT.jl

Julia module for reading MATLAB files

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Stipple.jl

The reactive UI library for interactive data applications with pure Julia.

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Peaks.jl

Find peaks (local extrema) of signals

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Kilosort

Fast spike sorting with drift correction for up to a thousand channels

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chebfun

Chebfun: numerical computing with functions.

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DynamicalSystems.jl

Award winning software library for nonlinear dynamics and nonlinear timeseries analysis

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LowLevelParticleFilters.jl

State estimation, smoothing and parameter estimation using Kalman and particle filters.

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sbi

Simulation-based inference toolkit

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AlgebraicDynamics.jl

Building dynamical systems compositionally

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