shervinsafavi / gpla

Uncovering the organization of neural circuits with generalized phase locking analysis

This repository gathers code for the paper:

Uncovering the organization of neural circuits with generalized phase locking analysis

This repository has the following structure:

#+RESULTS[533444a45df6f39b1bfca93012307dd90a7a03e6]:

./
├── localdata
│   ├── biophysWaveSimul
│   ├── dataHPsim
│   ├── explorations
│   └── handies
├── src
│   ├── methods
│   ├── simulations
│   ├── unclassified
│   └── utilities
└── visualizations
    ├── figure2
    ├── figure3
    ├── figure4
    ├── figure6
    ├── figure7
    └── figure8

20 directories

MATLAB codes provided in the ‘visualizations’ folder can be used to reproduce the main figures of this paper (except the schematic figures).

To reproduce the figures, you need a brief setup as explained below.

Setup

• Clone/download the content of the repository in your desired location,
• Download localdata from this repository
• start MATLAB and cd to your chosen location, and addpath the location (no nested addpath is required)

addpath path/to/your/desired/location

• run the ignit.m file

run ignit