juliorodrigues07 / tumor_growth

Implementation of a mammary tumor growth ODE model.

Tumor Growth

Implementation of a mammary tumor growth model in rats with Delay Differential Equations - DDE (PA from Computational Modeling course - DCOMP - UFSJ).

Requirements

• Python3 and pip package manager:

  sudo apt install python3 python3-pip build-essential python3-dev
  

• pandas library:

  pip install pandas
  

• SciPy library:

  pip install scipy
  

• Matplotlib library:

  pip install matplotlib
  

• numpy library:

  pip install numpy
  

To install all dependencies

./install_dependencies.sh

Execution

You can change the referred dataset (treated or untreated rats), plot the error evolution for each one of them, alter cisplatin dose, as well as raise or lower the ODE delay, just by modifying some source code lines.

Parameter Estimation

python3 differential_evolution.py

Simulation

python3 simulate.py