js2264

VplotR

R package to easily generate "V-plots" of paired-end sequencing data over regions of interest

HiCExperiment

Importing and manipulating Hi-C data in R

HiContacts

Analyzing Hi-C data in R with HiCExperiment objects

OHCA

Orchestrating Hi-C analysis with Bioconductor

tinyMapper

Versatile "quick'n'dirty" mapper for genome-wide assays (e.g. ChIP-seq, ATAC-seq, RNA-seq, ...)

tidyCoverage

BiocBook

metaTOR

Metagenomic binning based on Hi-C data

OMA

Orchestrating Microbiome Analysis

autobcl2fastq

Automatically fetch data from sequencer directory, process with with bcl2fastq and run some preliminary QCs

plyinteractions

BiocBook.template

BiocBookDemo

BiocBook Demo website

bioconda-recipes

Conda recipes for the bioconda channel.

cuteDev

fastcluster

Fast hierarchical clustering routines for R and Python.

HiContactsData

HiContacts companion data package

js2264

maraina_code

metamlg

MicrobeGenomes

nucFinder

R4MS

R for Mass Spectrometry documentation

rhdf5

Package providing an interface between HDF5 and R

Rsamtools

Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

S4Arrays

Foundation of array-like containers in Bioconductor

scRNAseq-workshop

Content of scRNAseq workshop

SingleRBook

The package wrapping the book, for deployment via the Bioconductor build system.

SparseArray

Efficient in-memory representation of multidimensional sparse arrays

YESCDSbook

BiocBook