josiahseaman

FluentDNA

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

skittle

DNASkittle is a web based genome browser that provides an interactive visualization of the raw sequence. Every nucleotide of 10Kbp can fit on one screen at a time. It makes heavy use of signal processing techniques to extract tandem repeats, and other genome elements.

LightbringerExalted

Character creator for the collaborative storytelling game Exalted.

ExaltedGMTool

Combat and status tracker for Exalted 2nd Edition RPG

veles

Visual reverse engineering tool.

DesktopSkittle

The older version of DNASkittle designed with QT in C++ for Desktop computers.

DNASkittleUtils

Fasta file handling utility functions that have been useful to me along the way.

khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

qmul-genome-convergence-pipeline

API and binaries for phylogenomic analyses, particularly comparison of input trees/alignments (CONTEXT) and detecting genomic convergence

assemblyStatics

A simple program for evaluate the assembly of a give genome.

CAFE

Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.

django-extras

Extensions for Django to solve common development situations not (or not yet) covered by the core Django framework.

DNA_Duplications

fcgm-migrate

Fate Core Game Manager Meteor.js Application

frontend-nanodegree-arcade-game

frontend-nanodegree-resume

intro-project-html5-hello-world

metagame

Compute metagame bounds from matchup charts.

MinION-Hackathon

Getting a Taxonomy Treemap streaming from a MinION device

Notebook-Experimentation

Experimenting with IPython Notebook

odgi

optimized dynamic genome graph implementation

paperprograms

Run Javascript on pieces of paper!

parenthetical

Markup allows Text Documents to be read at varying levels of detail

Portfolio

Responsive HTML Portfolio project featuring Udacity work.

SPIMAPWGD

udacity_framework

Testing area for HTML5 and CSS