josiahseaman / FluentDNA

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

josiahseaman/FluentDNA Issues

PDF
Updated 10 months ago4
Graph Genomes: ODGI Matrix layout in FluentDNA
Closed 5 years ago2
Python 3.7+ issue with `os` import of `errno`
Closed 5 years ago4
Visual C++ dependency in Python 3.5+
Closed 5 years ago2
Compiling on Old Environments
Closed 5 years ago1
Publication Refinement
Closed 5 years ago
The Big Rename: FluentDNA
Closed 5 years ago
Alignment Stats: add syntenic versus translocations
Closed 5 years ago
Transposon View: Resurrecting RepeatMasker gallery
Closed 5 years ago
Clarity in Whole Genome Alignment
Closed 6 years ago5
Refactor: Allow MSA mouseover in mixed layouts
Updated 5 years ago
Ideogram: Mouse coordinate padding is off at the end of each chromatin fiber row
Closed 5 years ago
Chromosome Streaming
Updated 6 years ago
Reproducibility: Download links for all Data Sources
Closed 6 years ago
Nice Layout for Examples Gallery
Updated 6 years ago
GO TO Functionality on Webpage
Updated 6 years ago
Search: What is Practical and Useful?
Updated 6 years ago
Genome Alignment: Ref doesn't show gaps in translocations
Updated 6 years ago
GFF3 support
Closed 6 years ago1
Ungapped index for Genome Alignment Mouseover
Updated 6 years ago
Bug: Nucleotide Number mouse over doesn't make sense in some contexts
Closed 6 years ago1
User defined Layout
Closed 6 years ago
Restore sequence retrieval under mouse cursor
Closed 6 years ago2
Sequence Retreival for Multiple Sequence Alignment
Closed 6 years ago1
Correct legend for protein sequences
Closed 6 years ago1
Include example data files and tests for users
Closed 6 years ago1
Chromosome Poster - Ideogram Layout with Space filling curve
Updated 6 years ago3
Page not loading on 127.0.0.1 private network
Updated 6 years ago
NucleotideNumber is showing even when pointing to label
Closed 6 years ago1
Machine learning backend
Updated 6 years ago1
Annotation Outlines have opacity side effects
Closed 6 years ago4
Useful to developers: Outputting Gene Coordinates to CSV
Updated 6 years ago
Future: Just in time rendering
Updated 6 years ago1
www-data folder in GUI build
Closed 6 years ago8
Double copying fasta files when using --contigs
Updated 6 years ago
Project Website - Documentation
Closed 6 years ago5
Allow user to set fixed width from command line
Closed 6 years ago
User Friendly Installation
Updated 6 years ago7
compilation error - hold_console_for_windows
Closed 6 years ago3
Runserver unresponsive
Updated 6 years ago
Color Zooming - best of both worlds
Updated 6 years ago1
Showing aligned sequence source as annotation
Closed 6 years ago
Investigate Annotorious as an Annotation tool
Updated 6 years ago
Mac max image size is much smaller (178 million pixels)
Updated 6 years ago
Running DDV2 in Windows
Closed 7 years ago12
VCF file parser for RADseq
Updated 7 years ago
Standalone DDV script that uses current python version
Updated 7 years ago
Quick mode should create a webpage and launch a browser for large files
Updated 7 years ago
Manage File Assets for Batch Processing of a Genome
Updated 8 years ago
Multiple Reference Contigs in one Alignment Visualization
Updated 8 years ago