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josiahseaman / FluentDNA

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

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Transposon View: Resurrecting RepeatMasker gallery

josiahseaman opened this issue · comments

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For publication, we want to show an example of the MSA Gallery. All examples are pulled from the Human genome rather than many individuals. Therefore, we'll use a gallery of transposon copies in the Human genome as annotated by RepeatMasker. I have to resurrect some 2017 code to do this and update it to generate MSA files.

  • Find Repeat Gallery source files
  • Generate MSA folder
  • Render MSA, store command