Jordi Deu-Pons's repositories
nextflow-language-server
Nextflow LSP server
pycliwrapper
Generic Python CLI wrapper
Crefi
Crefi is a workload creation tool. It can be used to create workload in multiple threads, creating files of different types, different sizes in different directory structures and perform multiple operations on the created data.
cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
eve
REST API framework designed for human beings
eve-swagger
Swagger extension for Eve-powered RESTful APIs
fuse
A Go package for implementing a FUSE file system.
gendas
Data query library highly focus to work with genomic datasets
go-simple-upload-server
Simple HTTP server to save artifacts
kubernetes
Production-Grade Container Scheduling and Management
metaboigniter
Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
nextflow
A DSL for data-driven computational pipelines
nf-jupyterlite
Demo pipeline to create a JupyterLite report
nf-report-base64
Create a report from a base64 string
pangenome
Renders a collection of sequences into a pangenome graph.
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
rnaseq-nf
A proof of concept of RNAseq pipeline
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
scflow
Complete analysis workflow for single-cell/nuclei RNA-sequencing data.
wave-showcase
Examples showing how to configure Nextflow to run with Wave containers provisioning service