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BBGLab - Barcelona Biomedical Genomics Lab (bbglab)

BBGLab - Barcelona Biomedical Genomics Lab

bbglab

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Location:Barcelona

Home Page:http://bbglab.irbbarcelona.org

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BBGLab - Barcelona Biomedical Genomics Lab's repositories

muts-needle-plot

A needle plot for mutation data

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boostdm-analyses

Source code to reproduce the figures of the boostDM paper

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bbgwiki

Website with info of all the tools and data used in the bbglab

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cgi-clinics-api

This repository contains python scripts to serve as a guide on how to use the CGI-Clinics API.

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wok

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cancer-detective

A simulation to learn about cancer and mutations, based on Cancer Genome Interpreter

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ch-drivers

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myvariant.info

MyVariant.info: A BioThings API for human variant annotations

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openvariant

Read, parse and operate different multiple input file formats with OpenVariant

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containers

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hartwig_biomarkers

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hotspot_propensity

Source code to reproduce hotspot propensity analyses and figures

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qmap

A tool to run a collection of similar jobs quickly and easily in parallel. It can run standalone or using different HPC schedulers (Slurm, Sun Grid Engine...)

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transvar

A fork of TransVar at Github

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adventofcode

Advent of Code

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boostdm-pipeline

Learning pipeline to identify somatic SNVs under positive selection.

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cancer-detective-pro

Eduscopi's version of Cancer Detective

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evolution_TALL_adults

The evolution of relapse of adult T-cell acute lymphoblastic leukemia

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intogen-plus

a framework for automatic and comprehensive knowledge extraction based on mutational data from sequenced tumor samples from patients.

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itab

Python tab files parsing and validating schema tools.

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sars-cov-2-genomics

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second-tumors-children

This repository contains the necessary code to reproduce the analysis of "Origins of Second Malignancies in Children and Mutational Footprint of Chemotherapy in Normal Tissues"

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