jonchang

recordpeeker

a mitmproxy script for peeking at FFRK data

beastcommentparser

Extracts and does other stuff with comments from BEAST trees

brownian-bottlenecks

simluation of the effects of population bottlenecks on trait evolution

homebrew-env

rate-partitioning

.github

Default .github files

bamm

A program for multimodel inference on speciation and trait evolution

bammtools

BAMMtools is an R package for analysis of BAMM results

best-trees

Get the best N trees from a BEAST treelog based on posterior probability

brew-bottle-stats

bucky

imported from http://www.stat.wisc.edu/~ane/bucky.git

convergence.js

MCMC convergence diagnostics in the browser

coronavirus

eeb177-scripts

exabayes

new official exabayes repository

fake-mechanical-turk

Acts like an Amazon Mechanical Turk endpoint but does some other neat stuff on top of that.

fish.reliability

kent-tools

masurca

mechanical-turk-endpoint

More or less replicates an Amazon Mechanical Turk endpoint

monte_carlo_simulation

monte carlo simulation from moore et al 2016 pnas

mpboot

MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation

phlawd

phylogenetics with databases

phyx

phylogenetics tools for linux (and other mostly posix compliant) computers

reBEAST

update the starting parameters in a BEAST 1.x XML file based on an existing tracelog

ropensci-2017

RWTY

R We There Yet?

simtree

Simulation of phylogenies under multi-shift BAMM process

VelvetOptimiser