joerivstrien

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

cyvcf2

cython + htslib == fast VCF and BCF processing

compact-bio

comparative clustering tool

NF-IAP

Illumina Analysis Pipeline in Nextflow

cyvcf

A fast Python library for VCF files leveraging Cython for speed.

CoxMapV3

Revised Cox et al. mouse genetic map, for build 39 of the mouse genome

PTATO

PTa Analysis TOolkit

LiRA

SCAN2

SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)

alfpy

http://www.combio.pl/alfree

bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

alphapeptstats

Python Package for the downstream analysis of mass-spectrometry-based proteomics data

PANDORA

MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline

rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

echtvar

using all the bits for echt rapid variant annotation and filtering

rbo

Implementation of Rank-biased Overlap

kage

Alignment-free genotyper for SNPs and short indels, implemented in Python.

hh-suite

Remote protein homology detection suite.

BaMM_webserver

Webserver for motif discovery with higher-order Bayesian Markov Models (BaMMs)

BaMMmotif2

Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.

BaMMmotif

Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.

immuneML

immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

twpca

🕝 Time-warped principal components analysis (twPCA)