CMBI

hssp

Create DSSP and HSSP files

dssp

The DSSP building software

kmad

Knowledge based multiple sequence alignment for intrinsically disordered proteins

metadome

MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.

SUsPECT

Variant effect prediction based on custom long-read transcriptomes

galiphy

ranking of genes using human phenotypes

compact-bio

comparative clustering tool

hommod

Homology Modeling Service

kmad-web

xssp-api

xssp-rest is a REST wrapper around the mkhssp and mkdssp applications.

BrainDM1

Scripts and files to reproduce the analysis of "A comprehensive atlas of fetal splicing patterns in the brain of adult myotonic dystrophy type 1 patients".

DM1_blood_RNAseq

hpi_isoseq_paper

Analysis scripts to accompany the manuscript titled "Multi-omic profiling of pathogen-stimulated primary immune cells"

NA12878-saav-detection

Salz et al (2021). The personalized proteome: a critical examination of bias in protein variant detection methods. Journal of Proteome Research

Neural-Retina-Atlas

Retina-SpliceAI

alphafold_finetune

Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions

bdb-web

BDB-web

databanks

FAIRDataCube

FAIRDataPoint

for search extension

FAIRDataPoint-client

FAIR Data Point Client application for browsing the metadata and administration.

gdomain

gdomain tool

mrs

Maarten's Retrieval Service

reprof-api

RESTful service for running reprof

seqwise-prediction

a deep learning tool for sequence wise prediction of protein classes

serendip_api

restful service that runs serendip for you

synthetic_cells

whynot2

wsv_rest

A restful service, used as wrapper around whatif wsv commands