CMBI (cmbi)

CMBI

cmbi

Geek Repo

Home Page:http://www3.cmbi.ru.nl/

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CMBI's repositories

hssp

Create DSSP and HSSP files

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dssp

The DSSP building software

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kmad

Knowledge based multiple sequence alignment for intrinsically disordered proteins

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metadome

MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.

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SUsPECT

Variant effect prediction based on custom long-read transcriptomes

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galiphy

ranking of genes using human phenotypes

compact-bio

comparative clustering tool

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hommod

Homology Modeling Service

xssp-api

xssp-rest is a REST wrapper around the mkhssp and mkdssp applications.

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BrainDM1

Scripts and files to reproduce the analysis of "A comprehensive atlas of fetal splicing patterns in the brain of adult myotonic dystrophy type 1 patients".

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hpi_isoseq_paper

Analysis scripts to accompany the manuscript titled "Multi-omic profiling of pathogen-stimulated primary immune cells"

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NA12878-saav-detection

Salz et al (2021). The personalized proteome: a critical examination of bias in protein variant detection methods. Journal of Proteome Research

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bdb-web

BDB-web

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FAIRDataPoint

for search extension

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FAIRDataPoint-client

FAIR Data Point Client application for browsing the metadata and administration.

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mrs

Maarten's Retrieval Service

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reprof-api

RESTful service for running reprof

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seqwise-prediction

a deep learning tool for sequence wise prediction of protein classes

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serendip_api

restful service that runs serendip for you

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vase

Visualization of Alignments Structures and Entropy

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wsv_rest

A restful service, used as wrapper around whatif wsv commands

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