K. Joeri van der Velde's repositories
pgx-variants
A tool to extract pharmacogenomic associations from next-generation sequencing data.
alphscore-gene-plots
Plot AlphaFold2-based pathogenicity prediction scores for a particular gene and suggest a gene-specific threshold for separating pathogenic from benign variants.
blood-group-variants
A tool to determine blood group antigens from next-generation sequencing data.
phdthesis_published
My PhD thesis "Translational software infrastructure for medical genetics".
animated-sirds
Exploring factors that influence the credibility of animated single-image random-dot stereograms
synthuesizer
Turn your regular PC keyboard into a MIDI synthesizer with Hue light show.
vkgl-history-analytics
A tool that parses VKGL variant classification data from public releases, connects variants across time and provides insights by visualizing different aspects.
alphamissense-vkgl-threshold
Optimal AlphaMissense threshold based on VKGL variant classifications
CDE-semantic-model-implementations
This repository contains implementation artifacts related to CDE-semantic-model
evolving-multiplicative-persistence
Find big multiplicative persistent numbers by evolution.
fair-schemas
FAIR schemas to enable and encourage data interoperability across systems
fairgenomes-semantic-model
FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.
ftl-profile-editor
Profile editor for FTL: Faster Than Light (www.ftlgame.com)
ftlautosave
Autosave program for FTL Faster Than Light - Advanced Edition, simply backs the save files up as they are updated
iCRFGenerator
The iCRF Generator: Generating interoperable electronic case report forms using online codebooks
kalashnikov
A Java implementation of the card game 'Kalashnikov' made by Life of Boris.
molgenis
MOLGENIS is an collaborative open source project on a mission to generate great software infrastructure for life science research.
molgenis-emx2
Beta for EMX2
molgenis-projects
Repository containing settings, configuration files, and public data for different MOLGENIS project servers
molgenis.org
Source code of the (new) website for MOLGENIS
ontologies
General repository to contain ontologies
rise-of-cultures-wonder-synergy
Calculates the highest wonder bonus synergies for Rise of Cultures
unified-fg
temporary repo for merging model
vibe
Variant Interpretation using Biomedical literature Evidence
vibe-suppl
Variant Interpretation using Biological Evidence - supplemental files
vp-api-specs
API specification of VP