joerivandervelde

K. Joeri van der Velde's repositories

pgx-variants

A tool to extract pharmacogenomic associations from next-generation sequencing data.

Language:JavaLGPL-3.03 30

alphscore-gene-plots

Plot AlphaFold2-based pathogenicity prediction scores for a particular gene and suggest a gene-specific threshold for separating pathogenic from benign variants.

Language:R1 10

blood-group-variants

A tool to determine blood group antigens from next-generation sequencing data.

Language:JavaLGPL-3.01 30

phdthesis_published

My PhD thesis "Translational software infrastructure for medical genetics".

Language:TeX1 20

animated-sirds

Exploring factors that influence the credibility of animated single-image random-dot stereograms

Language:Java010

synthuesizer

Turn your regular PC keyboard into a MIDI synthesizer with Hue light show.

Language:JavaGPL-3.0010

vkgl-history-analytics

A tool that parses VKGL variant classification data from public releases, connects variants across time and provides insights by visualizing different aspects.

Language:JavaLGPL-3.0000

alphamissense-vkgl-threshold

Optimal AlphaMissense threshold based on VKGL variant classifications

Language:R010

CDE-semantic-model-implementations

This repository contains implementation artifacts related to CDE-semantic-model

Language:HTML010

fair-schemas

FAIR schemas to enable and encourage data interoperability across systems

Language:Java000

fairgenomes-semantic-model

FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.

Language:HTMLNOASSERTION000

ftl-profile-editor

Profile editor for FTL: Faster Than Light (www.ftlgame.com)

Language:JavaGPL-2.0000

ftlautosave

Autosave program for FTL Faster Than Light - Advanced Edition, simply backs the save files up as they are updated

Language:JavaMIT000

A set of empirical scoring functions for predicting Receptor-Ligand binding affinities (in pKd units): protein-DNA/RNA, protein-small molecule, and protein-protein complexes. Each scoring function was built using generalized linear models (GLMs) applied to specific and curated data sets.

GPL-2.0000