jni

skan

Python module to analyse skeleton (thin object) images

affinder

Quickly find the affine matrix mapping one image to another using manual correspondence points annotation

zarpaint

Paint segmentations directly to on-disk/remote zarr arrays

napari

Napari PyQt5 and VisPy based GUI plugin

useful-histories

My repository for particularly useful analyses carried out in IPython (not the notebook)

annotrack

Napari plugin for annotating errors in object trajectories

asv

Airspeed Velocity: A simple Python benchmarking tool with web-based reporting

config

A master repository for all my configuration files

HAPPy

A software package to analyse radial hydrides present in light optical and scanning electron micrographs

iterseg

napari plugin for iteratively improving 3D instance segmentation of cells (u-net x watershed)

magicgui

build GUIs from python functions, using magic.

mastodon-bookmark-search

A simple web app to search and explore your Mastodon bookmarks

napari-defdap

Simple wrapper around DefDAP functionality

napari-docs

Documentation for napari (other than API docs)

napari-feedstock

A conda-smithy repository for napari.

napari-graph

Efficient graph data structures and algorithms for fast slicing, visualization, and editing

napari-plugin-template

A template repo used to make new napari plugins

napari-release-tools

Tools for speedup napari release process

napari-svg

A plugin for writing svg files from napari

napari-svg-feedstock

A conda-smithy repository for napari-svg.

nd2

Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction

ngff

Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

npe2

ome-zarr-py

Experimental implementation of images in Zarr files.

platelet-analysis-1

A python package for analysing platelet movement

platelet-tracking

A small napari plugin for tracking platelets

talk-napari-fit-2024

tracktour

network-flow based object tracking

vispy

Main repository for Vispy

zarpaint-feedstock

A conda-smithy repository for zarpaint.