jmuhlich

auto-minerva

omero-oauth

OMERO.web application to allow OAuth2 login to OMERO

ashlar

minerva_analysis

pysb

Python framework for Systems Biology modeling

ome-tiff-pyramid-tools

Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.

analysis_notebooks

ashlar-paper-figures

BaSiCPy

basicpy-docker-mcmicro

bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

cod038-plate-registration

cylinter

An Interactive Image Segmentation Filter for Multiplex Microscopy

htan-orator

Natural language descriptions of HTAN metadata

it-vuln-reports

lsp-minerva-tutorial

mal

mal - Make a Lisp

mcmicro

An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.

mcmicro-legacy

Nextflow prototype for mcmicro

minerva-author

Tool to create images and configuration files for Minerva-Story

mist_evaluation

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multiload-ng

Modern graphical system monitor for any panel

nf-test

Simple test framework for Nextflow pipelines

ome-omero-roitool

OME and OMERO ROI tool

prelude

Prelude is an enhanced Emacs 25.1+ distribution that should make your experience with Emacs both more pleasant and more powerful.

quantification

Quantification module for mcmicro

rt_import

test-datasets

Test data to be used for automated testing with the nf-core pipelines

UnMicst

UNet script, model, sample data