jmdelahanty

sleap

A Bonsai interface for real-time multi-animal pose tracking using SLEAP

GPU-Puzzles

Solve puzzles. Learn CUDA.

pynvml

Provide Python access to the NVML library for GPU diagnostics

compress-multiphoton

Compression for multiphoton calcium imaging movies and stacks

datajoint-elements

DataJoint Elements is a collection of curated computational workflows for neurophysiology experiments.

awesome-neuro-ai-papers

Papers from the intersection of deep learning and neuroscience

awful-ai

😈Awful AI is a curated list to track current scary usages of AI - hoping to raise awareness

codebook

The Good Research Code Handbook

minian

miniscope analysis pipeline with interactive visualizations

msgspec

A fast serialization and validation library, with builtin support for JSON, MessagePack, YAML, and TOML

tifffile

Read and write TIFF files

PulsePal

Code and CAD for Pulse Pal

headposts_etc

Designs for headposts, holders and various useful parts for head-fixed setups

pyshgp

Push Genetic Programming in Python.

Clojestions

Suggested exercises for learning Clojure

Clojush

The Push programming language and the PushGP genetic programming system implemented in Clojure.

ANDA_HMM_Course

paws

Automated pain scoring from paw withdrawal tracking data

pain-pipeline

JAABA

Janelia Animal Behavior Detector

face-rhythm

A pipeline for extracting and interpreting facial movements from video

zotero-scrub-metadata

Zotero plugin to strip identifying metadata from PDFs

datajoint-labbook

DataJoint LabBook is a graphical user interface built using React to facilitate working with DataJoint computational pipelines.

deepcell-tf

Deep Learning Library for Single Cell Analysis

vidio

simple, performant video reading and writing in python

HMMGLM

The code for the Hidden Markov Model Generalized Linear Model used to model discrete complex behavior profiles of mice using neural activity

excalidraw

Virtual whiteboard for sketching hand-drawn like diagrams

gputil

A Python module for getting the GPU status from NVIDA GPUs using nvidia-smi programmically in Python

sbxreader

Reader for Neurolabware scanbox files

scanbox

current neurolabware code