jlevy44

PathFlowAI

A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology

WSI-GTFE

Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.

PathFlow-MixMatch

Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.

InteractionTransformer

Extract meaningful interactions from machine learning models to obtain machine-learning performance with statistical model interpretability.

MethylNet

Modular framework for deep learning predictions on methylation data.

GCN4R

GCN4R Package

levylab

Levy Lab Website: https://jlevy44.github.io/levylab/

MEML_Colon_DSP_METS

AutoParisX

HE2Tri

PathPretrain

Tutorial for EDIT interns on basic components of PyTorch workflow. Can be used as quick script for pretraining image classification models / extracting features with traditional image folder classes, with focus in histology.

SatelliteCountyMortalityPrediction

Submit-HPC

Growing list of submission scripts for HPC for quick hacking.

ArcticAI

See application demo: https://arcticai.demo.levylab.host.dartmouth.edu/

BridgeCategoryStagingModels

CLAM

Data Efficient & Weakly Supervised Computational Pathology on Whole Slide Images

Colon_Protein_DSP_Study

dgm

Deep Graph Mapper: Seeing Graphs through the Neural Lens

DH_Pressure_Injury_Prediction

medstudent_resident_informatics_tutorials

MethylCapsNet-1

MolecularPathologyMachineLeaningTutorial

omicsio

Visium data processing scripts

PythonFlask-JobBoard

Build a Job Board with Python & Flask

QBS181_Convenience2

QBS181_ConvenienceFunctions3

QBS181_ConvenientFunctions_Test

Top2Vec

Top2Vec learns jointly embedded topic, document and word vectors.

trace_app

virtual_conference_template

💎 🐳 A super customizable Jekyll theme for personal site, team site, blog, project, documentation, etc.