Christensen-Lab-Dartmouth

Christensen-Lab-Dartmouth's repositories

MethylNet

Modular framework for deep learning predictions on methylation data.

Language:HTMLMIT47 7 15

PyMethylProcess

Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.

Language:PythonMIT33 6 16

methyLiftover

A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set

Language:R15 6 3

VAE_methylation

VAE methylation analysis using the Tybalt model developed by Way et al.

Language:HTMLBSD-3-Clause9 20

R code repository for statistical analysis and data visualization of manuscript "Genome-wide DNA methylation profiling shows a distinct epigenetic signature associated with Lung Macrophages in cystic fibrosis"

Language:RGPL-3.08 30

Normal-Breast-Methylation

Language:R8 30

VAE_analysis

DNA methylation analysis using VAE

Language:Jupyter Notebook5 4 1

brca_lowstage_DMGRs

The repository stores the analytical code for the pre-release of the manuscript titled "Tumor subtype and cell type independent DNA methylation alternations reveals twelve genes associated with low stage breast carcinoma".

Language:RBSD-3-Clause4 3 1