jisnoalia

Review-generate-free

Semi-automatic combine abstract from Pubmed and use kimi to generate review (free)

Review-generate-free

Semi-automatic combine abstract from Pubmed and use kimi to generate review (free)

TarCA.beta

The beta version of TarCA. To achieve a higher computational efficiency, we rewrite the entire package in a more compact way.

CeLEry

CeLEry: cell location recovery in single-cell RNA sequencing

SComatic

A tool for detecting somatic variants in single cell data

ggChineseColor

A collection of color palettes include amazing and stunning Chinese color. 🙄😶‍🌫️

Prognotistics_model_generator

A pipeline generates nearly 20 millions mRNA-exp based cancer prognostics models with AUC > .7 in split training and testing datasets which are worthless but useful.

Compass

In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

scRNAseq-analysis-notes

scRNAseq analysis notes from Ming Tang

scBasset

Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.

SPROD

SPROD: Spatial expression profiling de-noising

pengToolkit

My useful R package.

sscClust

simpler single cell RNAseq data clustering

KPTracer-release

Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"

GLUE

Graph-linked unified embedding for single-cell multi-omics data integration

dandelion

dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data

celltypist

A tool for semi-automatic cell type classification

Single-cell-miRNA-prediction

Present two methods to calculate the single-cell miRNA : Biological way and Machine learning way

cNMF

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

CellChat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

circle_bar

clusterProfiler

:bar_chart: A universal enrichment tool for interpreting omics data