BE131_JK
Berkeley 2018 Fall BioE131 | lab, class repo
Introduction to Computational Molecular and Cell Biology
Lab List
- lab2 : Biological gene tree analysis / bar plotting, box plotting link
- lab3 : Raw file analysis from 'Romeo and Juliet.txt' link
- lab4 : Forming BIO databases with SQlite, making assosiative table link
- lab5 : Use RNAfold to predict the folded structure of allosteric ribozyme, verify the bio-logic-gate controlled by OBS binding input & stem II activation output link
- lab6 : Understanding the sequences, plot the depth results link
- lab7 : Generating random DNA sequences, run compression algorithms and analyze/calculate based on principle of each algorithm link
- lab8 & 9 : Sequence alignment with SPAdes, finding N50 score, Genomic Annotation link
- lab10 : Implementing Needleman-Wunsch algorithm and run-traceback pairwise alignment of amino acids. link
- Final Project : To analyze unknown genome : An analysis of Population Diversity and Genetic Variation link
License Information
See the LICENSE file for license rights and limitations.