Jingjie Yeo's starred repositories

FriendsDontLetFriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

WebPlotDigitizer

Computer vision assisted tool to extract numerical data from plot images.

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lammps-tutorials

LAMMPS tutorials for Beginners

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n2p2

n2p2 - A Neural Network Potential Package

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olca-app

Source code of openLCA

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RadonPy

RadonPy is a Python library to automate physical property calculations for polymer informatics.

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tellurium

Python Environment for Modeling and Simulating Biological Systems

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nfp

Keras layers for end-to-end learning with rdkit and pymatgen

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MSE_Spring2024

The materials for the Spring Mathematics in Materials course at the UTK MSE

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openawsem

An implementation of the AWSEM coarse-grained protein folding forcefield in OpenMM

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quests

Quick Uncertainty and Entropy via STructural Similarity

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open3spn2

An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM

Language:PythonLicense:MITStargazers:18Issues:5Issues:10
Language:C++License:LGPL-3.0Stargazers:16Issues:6Issues:13

tissue-forge

Interactive, particle-based physics, chemistry and biology modeling and simulation environment

Language:C++License:NOASSERTIONStargazers:15Issues:3Issues:23

emc-pypi

Python interface for Enhanced Monte Carlo (EMC)

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auto_cgui

Automatic CHARMM-GUI browser interaction with Python

Language:PythonLicense:MITStargazers:9Issues:3Issues:2

ciml-summer-institute-2024

Repository for the CIML 2024 Summer Institute training materials.

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EZFF

Python-based library for easy force-field fitting

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Machine-Learning-For-Everyone

This repository was created to host material that I created for the "Machine Learning for Everyone: May The Course Be With You!" virtual course that I teach.

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ScMiles2.0

ScMiles2.9

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