gbkit
A tool for Genbank file manipulation/statistics.
Inspired heavily by the excellent SeqKit.
This doesn't exist yet
I'm doing documentation-driven development, so for now none of this exists.
Installation
With Cargo 1.65+:
cargo install gbkit
Download pre-compiled binaries for Linux, Mac and Windows here.
Build from source:
git clone https://github.com/jimrybarski/gbkit && \
pushd gbkit && \
cargo build --release && \
popd
Commands
fasta converts features to FASTA format.
stats shows summary statistics of the size and count of features/loci.
filter filters by size/contents/IDs.
range creates a new Genbank with features between the given range.
grep searches for sequences/IDs.
rmdup removes duplicates by sequence/ID.
head selects the first N records.
sort sorts records by ID.
shuffle put the records in random order.
flip reverses the orientation of the locus and features.