jimrybarski

nd2reader

Pure Python library for reading NIS Elements ND2 images and metadata

autogram

Searches for autograms (sentences that give the count of each letter that they contain)

weathergov

A library to retrieve and parse weather information from US government sources

biofits

Common biochemical data fitting functions

fylm

FYLM Critic: extracts data from Fission Yeast Lifespan Microdissector images.

pilercr-parser

A parser for the output of the PILER-CR CRISPR annotation tool

piwarmer

Raspberry Pi Temperature Controller

archaic-cas-names

A database of the former names of CRISPR-associated genes

consurf-pymol

Simple script to color code amino acids according to ConSurf analysis

dot

finkelstein-lab-palette

The lab's standard color palette

finkelsteinlab.github.io

fylm_critic

Analyzes microscopy data of Fission Yeast Lifespan Microdissector experiments

gb-io

A Rust library for parsing, writing and manipulating Genbank sequence files

gbkit

A tool for Genbank file manipulation/statistics

hojidigene

Honest Jimbo's Discount Gene Editor/Viewer

i3block-utils

Small programs for displaying information in my i3 bar

illumina-coordinates

Parses Illumina sequence identifiers

interrogate

Explain yourself! Interrogate a codebase for docstring coverage.

laptop-setup

Sets up my laptop

minced-parser

A Rust parser for the minCED CRISPR array annotation tool

mutmut

Mutation testing system

okabe-ito-inkscape-palette

Okabe-Ito and grayscale color palette for Inkscape

okabe-ito-py

Okabe-Ito color palette for Python

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

seqtools-cli

Command line reverse complement

stat_rethinking_2023

Statistical Rethinking Course for Jan-Mar 2023

tools

Dotfiles, scripts, and installation scripts

uncertainties

Transparent calculations with uncertainties on the quantities involved (aka "error propagation"); calculation of derivatives.

Zulma

A Bulma theme for Zola