jiangchb's repositories
bHLH_annotator
automatic annotation of bHLH gene family in plants
BnaSNPDB
An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions
CandiHap
A haplotype analysis toolkit for natural variation study.
chromeister
A dotplot generator for large chromosomes
clinker
Gene cluster comparison figure generator
CMplot
📊 Circular and Rectangular Manhattan Plot
FastANI
Fast Whole-Genome Similarity (ANI) Estimation
gfanno
Gene Family Annotation Workflow
ggcoverage
Visualize and annotate genomic coverage with ggplot2
gw
Genome browser and variant annotation
karyoploteR
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
KIPEs
Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.
MTX_model
R package for differential expression analysis in metatranscriptomics
MYB_annotator
This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies.
NeoLoopFinder
A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
paf2dotplot
Draw a dot plot from a paf alignment
PBBtools
collection of mini tools for the BioinfToolServer
phyd3
Phylogenetic tree viewer based on D3.js
smashpp
Find and visualize rearrangements in DNA sequences
snipit
snipit: summarise snps relative to your reference sequence
SomeScript-epcr
There are some useful scripts.
trackplot
Generate IGV style locus tracks from bigWig files in R
VariantVisualization.jl
Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
vcf2circos
python plotly Circos from VCF